spec2nii-dicom - Man Page
spec2nii dicom – convert from Siemens DICOM format.
Synopsis
spec2nii dicom [-h] [-t TAG] [--voi] [-j] [-f FILEOUT] [-o OUTDIR] [--nifti1] [--override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...]] [--override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...]] [--override_dwelltime OVERRIDE_DWELLTIME] [--anon] [--verbose] file
Options
Positional Arguments
- file
File or directory to convert.
Optional Arguments
- -h, --help
Show a help message and exit.
- -t TAG, --tag TAG
Specify NIfTI MRS tag used for 5th dimension if multiple files are passed. Defaults to DIM_DYN.
- --voi
Output VOI as single voxel NIfTI mask.
- -j, --json
Create json sidecar.
- -f FILEOUT, --fileout FILEOUT
Output file base name (default = input file name).
- -o OUTDIR, --outdir OUTDIR
Output location (default = .).
- --nifti1
- --override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...]
Override ResonantNucleus field with input(s). E.g. ‘2H’.
- --override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...]
Override SpectrometerFrequency field with input(s). Input in MHz.
- --override_dwelltime OVERRIDE_DWELLTIME
Override dwell time field with input. Input in seconds.
- --anon
Create file without sensitive metadata. For greater control use spec2nii-anon(1).
--verbose
See Also
spec2nii-auto(1), spec2nii-twix(1), spec2nii-rda(1), spec2nii-uih(1), spec2nii-philips(1), spec2nii-philips_dl(1), spec2nii-philips_dcm(1), spec2nii-ge(1), spec2nii-text(1), spec2nii-jmrui(1), spec2nii-raw(1), spec2nii-bruker(1), spec2nii-varian(1), spec2nii-anon(1), spec2nii-dump(1), spec2nii-extract(1), spec2nii-insert(1)
Referenced By
spec2nii(1), spec2nii-anon(1), spec2nii-auto(1), spec2nii-bruker(1), spec2nii-dump(1), spec2nii-extract(1), spec2nii-ge(1), spec2nii-insert(1), spec2nii-jmrui(1), spec2nii-philips(1), spec2nii-philips_dcm(1), spec2nii-philips_dl(1), spec2nii-raw(1), spec2nii-rda(1), spec2nii-text(1), spec2nii-twix(1), spec2nii-uih(1), spec2nii-varian(1).