spec2nii-bruker - Man Page

spec2nii bruker – convert from Bruker data format

Synopsis

spec2nii bruker [-h] [-q QUERY] [-m {2DSEQ,FID}] [-d] [-j] [-f FILEOUT] [-o OUTDIR] [--nifti1] [--override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...]] [--override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...]] [--override_dwelltime OVERRIDE_DWELLTIME] [--anon] [--verbose] file

Options

Positional Arguments

file

2dseq file to convert.

Optional Arguments

-h--help

Show a help message and exit.

-q QUERY--query QUERY
-m {2DSEQ,FID}, --mode {2DSEQ,FID}
-d--dump_headers

Dump bruker header files into json header extension.

-j--json

Create json sidecar.

-f FILEOUT--fileout FILEOUT

Output file base name (default = input file name).

-o OUTDIR--outdir OUTDIR

Output location (default = .).

--nifti1
--override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...]

Override ResonantNucleus field with input(s). E.g. ‘2H’.

--override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...]

Override SpectrometerFrequency field with input(s). Input in MHz.

--override_dwelltime OVERRIDE_DWELLTIME

Override dwell time field with input. Input in seconds.

--anon

Create file without sensitive metadata. For greater control use spec2nii-anon(1).

--verbose

See Also

spec2nii(1)

spec2nii-auto(1), spec2nii-twix(1), spec2nii-dicom(1), spec2nii-rda(1), spec2nii-uih(1), spec2nii-philips(1), spec2nii-philips_dl(1), spec2nii-philips_dcm(1), spec2nii-ge(1), spec2nii-text(1), spec2nii-jmrui(1), spec2nii-raw(1), spec2nii-varian(1), spec2nii-anon(1), spec2nii-dump(1), spec2nii-extract(1), spec2nii-insert(1)

Referenced By

spec2nii(1), spec2nii-anon(1), spec2nii-auto(1), spec2nii-dicom(1), spec2nii-dump(1), spec2nii-extract(1), spec2nii-ge(1), spec2nii-insert(1), spec2nii-jmrui(1), spec2nii-philips(1), spec2nii-philips_dcm(1), spec2nii-philips_dl(1), spec2nii-raw(1), spec2nii-rda(1), spec2nii-text(1), spec2nii-twix(1), spec2nii-uih(1), spec2nii-varian(1).

July 2024