spec2nii - Man Page
spec2nii – convert raw spectroscopy data to NIfTI format
Synopsis
spec2nii [-h] [-v] {auto,twix,dicom,rda,uih,philips,philips_dl,philips_dcm,ge,text,jmrui,raw,bruker,varian,anon,dump,extract,insert} ...
Options
Positional Arguments
- auto
Attempt automatic identification and conversion.
- twix
Convert from Siemens .dat twix format.
- dicom
Convert from Siemens DICOM format.
- rda
Convert from Siemens spectroscopy .rda format.
- uih
Convert from UIH DICOM format.
- philips
Convert from Philips spar/sdat format.
- philips_dl
Convert from Philips data/list format.
- philips_dcm
Convert from Philips DICOM format.
- ge
Convert from GE p-file format.
- text
Convert from plain text format.
- jmrui
Convert from jMRUI text or binary formats.
- raw
Convert from LCModel RAW text format.
- bruker
Convert from Bruker data format.
- varian
Convert from the Varian/OpenVnmrJ data format
- anon
Anonymise existing NIfTI-MRS file.
- dump
Dump contents of headers from existing NIfTI-MRS file.
- extract
Generate json sidecar from existing NIfTI-MRS file.
- insert
Insert json formatted file into existing NIfTI-MRS file.
Optional Arguments
- -h, --help
Show a help message and exit
- -V, --version
Show program’s version number and exit
Notes
If you use spec2nii(1) please cite:
Clarke WT, Bell TK, Emir UE, Mikkelsen M, Oeltzschner G, Shamaei A, Soher BJ, Wilson M. NIfTI-MRS: A standard data format for magnetic resonance spectroscopy. Magn Reson Med. 2022. doi: 10.1002/mrm.29418.
See Also
spec2nii-auto(1), spec2nii-twix(1), spec2nii-dicom(1), spec2nii-rda(1), spec2nii-uih(1), spec2nii-philips(1), spec2nii-philips_dl(1), spec2nii-philips_dcm(1), spec2nii-ge(1), spec2nii-text(1), spec2nii-jmrui(1), spec2nii-raw(1), spec2nii-bruker(1), spec2nii-varian(1), spec2nii-anon(1), spec2nii-dump(1), spec2nii-extract(1), spec2nii-insert(1)
Referenced By
spec2nii-anon(1), spec2nii-auto(1), spec2nii-bruker(1), spec2nii-dicom(1), spec2nii-dump(1), spec2nii-extract(1), spec2nii-ge(1), spec2nii-insert(1), spec2nii-jmrui(1), spec2nii-philips(1), spec2nii-philips_dcm(1), spec2nii-philips_dl(1), spec2nii-raw(1), spec2nii-rda(1), spec2nii-text(1), spec2nii-twix(1), spec2nii-uih(1), spec2nii-varian(1).