klusta - Man Page

klusta [Options] PRM_FILE

Spikesort a dataset.

By default, perform spike detection (with SpikeDetekt) and automatic clustering (with KlustaKwik2). You can also choose to run only one step.

You need to specify three pieces of information to spikesort your data:

* The raw data file: typically a `.dat` file.

* The PRM file: a Python file with the `.prm` extension, containing the parameters for your sorting session.

* The PRB file: a Python file with the `.prb` extension, containing the layout of your probe.

--output-dir DIRECTORY

Output directory.

--interval <FLOAT FLOAT>...

Interval in seconds, e.g. `--interval 0 2`.

--channel-group INTEGER

Channel group to cluster (all by default).

--detect-only

Only do spike detection.

--cluster-only

Only do automatic clustering.

--legacy-output

Save `.res` and `.clu` files in addition to `.kwik`.

--overwrite

Overwrite the Kwik file.

--debug

Use the DEBUG logging level.

--version

Show the version and exit.

--help

Show this message and exit.