dbmerge - Man Page

    dbmerge --input A.fsdb --input B.fsdb [-T TemporaryDirectory] [-nNrR] column [column...]

or
   cat A.fsdb | dbmerge --input - --input B.fsdb [-T TemporaryDirectory] [-nNrR] column [column...]

or
   dbmerge [-T TemporaryDirectory] [-nNrR] column [column...] --inputs A.fsdb [B.fsdb ...]

or
   { echo "A.fsdb"; echo "B.fsdb" } | dbmerge --xargs column [column...]

Merge all provided, pre-sorted input files, producing one sorted result. Inputs can both be specified with --input, or with --inputs, or one can come from standard input and the other from --input. With --xargs, each line of standard input is a filename for input.

Inputs must have identical schemas (columns, column order, and field separators).

Unlike dbmerge2, dbmerge supports an arbitrary number of  input files.

Because this program is intended to merge multiple sources, it does not default to reading from standard input. If you wish to read standard input, use - as the input source.

Also, because we deal with multiple input files, this module doesn't output anything until it's run.

dbmerge consumes a fixed amount of memory regardless of input size. It therefore buffers output on disk as necessary. (Merging is implemented a series of two-way merges and possibly an n-way merge at the end, so disk space is O(number of records).)

dbmerge will merge data in parallel, if possible. The --parallelism option can control the degree of parallelism, if desired.

General option:

--xargs

Expect that input filenames are given, one-per-line, on standard input. (In this case, merging can start incrementally.)

--removeinputs

Delete the source files after they have been consumed. (Defaults off, leaving the inputs in place.)

-T TmpDir

where to put tmp files. Also uses environment variable TMPDIR, if -T is  not specified. Default is /tmp.

--parallelism N or -j N

Allow up to N merges to happen in parallel. Default is the number of CPUs in the machine.

--endgame (or --noendgame)

Enable endgame mode, extra parallelism when finishing up. (On by default.)

Sort specification options (can be interspersed with column names):

-r or --descending

sort in reverse order (high to low)

-R or --ascending

sort in normal order (low to high)

-n or --numeric

sort numerically

-N or --lexical

sort lexicographically

This module also supports the standard fsdb options:

-d

Enable debugging output.

-i or --input InputSource

Read from InputSource, typically a file name, or - for standard input, or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects.

-o or --output OutputDestination

Write to OutputDestination, typically a file name, or - for standard output, or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects.

--autorun or --noautorun

By default, programs process automatically, but Fsdb::Filter objects in Perl do not run until you invoke the run() method. The --(no)autorun option controls that behavior within Perl.

--header H

Use H as the full Fsdb header, rather than reading a header from then input.

--help

Show help.

--man

Show full manual.

dbmerge2(1), dbsort(1), Fsdb(3)

Copyright (C) 1991-2024 by John Heidemann <johnh@isi.edu>

This program is distributed under terms of the GNU general public license, version 2.  See the file COPYING with the distribution for details.

dbfilecat(1), dbmerge2(1), dbsort(1).